Basic Information
Locus ID:
BniB03g039760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 19872989 | 19873891 | - | BniB03g039760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 33,200.00 Da | 70.14 | 87.67 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 117 | 160 | 2.71535E-20 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 1.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 163 | 1.58E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 164 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 4.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.69582 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 300 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_006390676.1 | RING-H2 finger protein ATL3 [Eutrema salsugineum] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W4Y1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_015658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology