halophFGD

Basic Information

Locus ID: BniB03g037980.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: glycoside hydrolase family 28 protein polygalacturonase (pectinase) family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B3	19005435	19007760	-	BniB03g037980.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	53,887.02 Da	55.03	75.25	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00295	Glycosyl hydrolases family 28	128	447	1.2E-83	IPR000743
SUPERFAMILY	SSF51126	Pectin lyase-like	93	479	2.99E-124	IPR011050
Gene3D	G3DSA:2.160.20.10	-	83	479	2.0E-118	IPR012334
SMART	SM00710	pbh1	260	286	760.0	IPR006626
SMART	SM00710	pbh1	287	308	29.0	IPR006626
SMART	SM00710	pbh1	370	391	1300.0	IPR006626
SMART	SM00710	pbh1	341	362	5.5	IPR006626
SMART	SM00710	pbh1	237	259	4900.0	IPR006626
SMART	SM00710	pbh1	310	331	2100.0	IPR006626
MobiDBLite	mobidb-lite	consensus disorder prediction	58	84	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	36	90	-	-

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004650 (polygalacturonase activity)

KEGG Pathway

KO Term:

K01213 (galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67])

Pathway:

ko00040 (Pentose and glucuronate interconversions) map00040 (Pentose and glucuronate interconversions) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00081 (Pectin degradation)

Reaction:

R01982 (Pectate + H2O <=> D-Galacturonate + Pectate) R07413 (Digalacturonate + H2O <=> 2 D-Galacturonate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G02460.1	Pectin lyase-like superfamily protein.
RefSeq	XP_013665604.2	polygalacturonase At1g48100 [Brassica napus]
Swiss-Prot	Q949Z1	Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1
TrEMBL	A0A817AZC3	(rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A10P01250.1 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg28140, jg30000
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10256, gene_15682, gene_19235
Amaranthaceae	Atriplex hortensis	4	Ah000037, Ah005360, Ah019682, Ah019956
Amaranthaceae	Beta vulgaris	3	BVRB_3g059660, BVRB_4g079790, BVRB_5g122360
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg17585, Sbi_jg17586, Sbi_jg31225, Sbi_jg38189 ... Sbi_jg58047, Sbi_jg62256, Sbi_jg6320, Sbi_jg6321
Amaranthaceae	Salicornia europaea	3	Seu_jg15538, Seu_jg25674, Seu_jg835
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003648, GOSA_00004547, GOSA_00007397
Amaranthaceae	Suaeda glauca	6	Sgl01605, Sgl06770, Sgl24096, Sgl29277, Sgl54609, Sgl59945
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000006997, gene:ENSEOMG00000015250 ... gene:ENSEOMG00000032101, gene:ENSEOMG00000044935
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0012700, CQ.Regalona.r1.3BG0012790 ... CQ.Regalona.r1.4AG0004840, CQ.Regalona.r1.5BG0029220
Anacardiaceae	Pistacia vera	2	pistato.v30007660, pistato.v30232510
Apiaceae	Apium graveolens	4	Ag10G00289, Ag8G01810, Ag9G01939, Ag9G02355
Arecaceae	Cocos nucifera	2	COCNU_01G000580, COCNU_04G011570
Arecaceae	Phoenix dactylifera	5	gene-LOC103701031, gene-LOC103701126, gene-LOC103722672 ... gene-LOC120105526, gene-LOC120105531
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2240.V1.1, AsparagusV1_07.1164.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G09012, Ftri9G33356
Brassicaceae	Arabidopsis thaliana	4	AT1G02460.1, AT1G48100.1, AT1G56710.1, AT4G01890.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10007481m.g.v1.0, Thhalv10011452m.g.v1.0 ... Thhalv10023906m.g.v1.0, Thhalv10029273m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g01530.v2.2, Sp1g35060.v2.2, Sp6g01740.v2.2
Brassicaceae	Brassica nigra	5	BniB02g000190.2N, BniB03g037980.2N, BniB04g018910.2N ... BniB04g062980.2N, BniB08g040570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G0499, Ceq09G1401
Casuarinaceae	Casuarina glauca	2	Cgl06G0514, Cgl09G1492
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g05620
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g01650, gene.Thate06g19130
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6213
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.509, evm.TU.LG11.1132
Plantaginaceae	Plantago ovata	4	Pov_00007108, Pov_00007109, Pov_00016513, Pov_00022543
Plumbaginaceae	Limonium bicolor	3	Lb1G04320, Lb1G06758, Lb2G12092
Poaceae	Echinochloa crus-galli	9	AH02.1379, AH02.1538, AH05.3190, BH02.1443, BH02.1608 ... BH05.3188, CH02.1572, CH02.1758, CH05.3235
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0013910, gene-QOZ80_1AG0015450 ... gene-QOZ80_1BG0062730, gene-QOZ80_1BG0064290, gene-QOZ80_5AG0400170, gene-QOZ80_5BG0448840
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0069260.1, HORVU.MOREX.r3.7HG0708260.1
Poaceae	Lolium multiflorum	2	gene-QYE76_010709, gene-QYE76_052660
Poaceae	Oryza coarctata	6	Oco01G008720, Oco01G009430, Oco02G008890, Oco02G009790 ... Oco09G006110, Oco10G005780
Poaceae	Oryza sativa	2	LOC_Os01g19170.1, LOC_Os05g20020.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G129900, gene-BS78_03G143600 ... gene-BS78_06G227100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0501393, Pt_Chr0603679
Poaceae	Sporobolus alterniflorus	6	Chr01G022740, Chr02G021540, Chr03G007030, Chr03G007660 ... Chr05G012400, Chr08G007360
Poaceae	Thinopyrum elongatum	3	Tel1E01G502300, Tel5E01G888800, Tel7E01G565300
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG046270, gene_TRIDC1BG052390 ... gene_TRIDC7AG046220, gene_TRIDC7BG038250
Poaceae	Triticum aestivum	6	TraesCS1A02G311100.1, TraesCS1B02G322500.1 ... TraesCS1D02G311000.1, TraesCS7A02G330000.1, TraesCS7B02G230600.1, TraesCS7D02G326800.1
Poaceae	Zea mays	4	Zm00001eb129970_P001, Zm00001eb131090_P001 ... Zm00001eb339720_P001, Zm00001eb340640_P001
Poaceae	Zoysia japonica	4	nbis-gene-13458, nbis-gene-17829, nbis-gene-51016 ... nbis-gene-6604
Poaceae	Zoysia macrostachya	4	Zma_g10185, Zma_g27945, Zma_g7848, Zma_g7919
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.1324, evm.TU.LG06.1609, evm.TU.LG08.1269 ... evm.TU.LG09.650, evm.TU.LG11.964, evm.TU.LG22.171
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13110, gene.Posoc06g21340
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.32, evm.TU.Scaffold_2_RagTag.2125 ... evm.TU.Scaffold_6_RagTag.1230, evm.TU.Scaffold_9_RagTag.712
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-16215, nbisL1-mrna-21508, nbisL1-mrna-8251
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13615, nbisL1-mrna-20039, nbisL1-mrna-3795 ... nbisL1-mrna-7791
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1061, nbisL1-mrna-18575, nbisL1-mrna-5127
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.650, evm.TU.utg000011l.790 ... evm.TU.utg000012l.21
Rhizophoraceae	Kandelia obovata	3	Maker00007760, Maker00011185, Maker00011337
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13510, nbisL1-mrna-1633, nbisL1-mrna-21995 ... nbisL1-mrna-7941
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-28, nbisL1-mrna-4015, nbisL1-mrna-5325
Salicaceae	Populus euphratica	8	populus_peu06846, populus_peu13178, populus_peu13220 ... populus_peu13221, populus_peu15572, populus_peu20745, populus_peu27393, populus_peu31381
Solanaceae	Lycium barbarum	3	gene-LOC132598489, gene-LOC132599826, gene-LOC132615506
Solanaceae	Solanum chilense	3	SOLCI001455200, SOLCI003820900, SOLCI006174100
Solanaceae	Solanum pennellii	3	gene-LOC107015524, gene-LOC107018436, gene-LOC107029442
Tamaricaceae	Reaumuria soongarica	2	STRG.17610_chr09_+, gene_588
Tamaricaceae	Tamarix chinensis	2	TC07G2782, TC12G1719
Zosteraceae	Zostera marina	2	Zosma01g27200.v3.1, Zosma01g37050.v3.1