Basic Information
Locus ID:
BniB03g036910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 18445378 | 18450724 | + | BniB03g036910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 114,056.68 Da | 61.34 | 81.60 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 357 | 398 | 2.51375E-21 | - |
| CDD | cd01989 | STK_N | 441 | 577 | 9.46119E-43 | - |
| CDD | cd01989 | STK_N | 10 | 160 | 2.8111E-33 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 918 | 959 | 5.24624E-24 | - |
| Pfam | PF04564 | U-box domain | 915 | 984 | 5.9E-19 | IPR003613 |
| Pfam | PF04564 | U-box domain | 354 | 423 | 4.9E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 902 | 984 | 3.53E-27 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 341 | 425 | 2.91E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 911 | 985 | 3.2E-28 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 351 | 430 | 8.6E-24 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 439 | 574 | 4.2E-5 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 356 | 419 | 2.1E-21 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 917 | 980 | 5.4E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 913 | 985 | 42.691113 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 352 | 426 | 32.748547 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 223 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
| Coils | Coil | Coil | 639 | 663 | - | - |
| Coils | Coil | Coil | 856 | 876 | - | - |
| Coils | Coil | Coil | 737 | 764 | - | - |
| Coils | Coil | Coil | 814 | 845 | - | - |
| Coils | Coil | Coil | 229 | 259 | - | - |
| Coils | Coil | Coil | 695 | 715 | - | - |
| Coils | Coil | Coil | 268 | 302 | - | - |
| Coils | Coil | Coil | 772 | 806 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01660.2 | - | 0 |
| RefSeq | XP_018436378.1 | PREDICTED: U-box domain-containing protein 56 isoform X1 [Raphanus sativus] | 0 |
| P0C6E7 | Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=PUB55 PE=3 SV=1 | 0 | |
| TrEMBL | A0A7G2DTF6 | (thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS61 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01660.1, AT1G01670.1, AT1G01680.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007636m.g.v1.0, Thhalv10007902m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00630.v2.2, Sp1g00640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036900.2N, BniB03g036910.2N, BniB08g030000.2N |