Basic Information
Locus ID:
BniB03g036900.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 18442077 | 18444325 | + | BniB03g036900.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 34,769.71 Da | 44.46 | 74.62 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 236 | 277 | 3.59809E-22 | - |
| CDD | cd01989 | STK_N | 35 | 158 | 1.70319E-36 | - |
| Pfam | PF04564 | U-box domain | 232 | 302 | 1.2E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 304 | 8.48E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 307 | 2.2E-29 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 10 | 151 | 1.1E-5 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 235 | 298 | 7.4E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 231 | 305 | 35.0042 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 230 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01680.1 | plant U-box 54. | 0 |
| RefSeq | XP_018482313.1 | PREDICTED: U-box domain-containing protein 54 [Raphanus sativus] | 0 |
| Q9LQ92 | U-box domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=PUB54 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VYU4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013604 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01660.1, AT1G01670.1, AT1G01680.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007636m.g.v1.0, Thhalv10007902m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00630.v2.2, Sp1g00640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036900.2N, BniB03g036910.2N, BniB08g030000.2N |