Basic Information
Locus ID:
BniB03g036440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBC31
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 18168817 | 18169757 | + | BniB03g036440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 17,204.54 Da | 35.74 | 70.93 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 8 | 146 | 4.57106E-58 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 145 | 5.3E-48 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 150 | 2.49E-53 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 150 | 6.3E-60 | IPR016135 |
| SMART | SM00212 | ubc_7 | 9 | 150 | 9.3E-56 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 6 | 150 | 50.868645 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 78 | 93 | - | IPR023313 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G36340.1 | ubiquitin-conjugating enzyme 31. | 0 |
| RefSeq | XP_033147388.1 | probable ubiquitin-conjugating enzyme E2 31 isoform X1 [Brassica rapa] | 0 |
| Q9C8X7 | Probable ubiquitin-conjugating enzyme E2 31 OS=Arabidopsis thaliana OX=3702 GN=UBC31 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B2N9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013653 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G36340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001874m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB03g036440.2N |