Basic Information
Locus ID:
BniB03g035870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 17737097 | 17740608 | + | BniB03g035870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 95,964.75 Da | 38.70 | 78.49 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 681 | 834 | 2.09517E-59 | - |
| Pfam | PF06337 | DUSP domain | 28 | 118 | 2.0E-21 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 278 | 833 | 1.6E-84 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 7 | 118 | 6.41E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 276 | 836 | 1.18E-108 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 2 | 127 | 1.3E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 128 | 214 | 3.5E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 652 | 844 | 1.7E-55 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 262 | 476 | 1.1E-66 | - |
| SMART | SM00695 | dusp | 24 | 120 | 3.8E-34 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 5 | 117 | 18.424431 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 278 | 836 | 58.01363 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 279 | 294 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 778 | 795 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32850.1 | ubiquitin-specific protease 11. | 0 |
| RefSeq | XP_013638636.1 | PREDICTED: putative ubiquitin carboxyl-terminal hydrolase 11 isoform X2 [Brassica oleracea var. oleracea] | 0 |
| Q9MAQ3 | Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana OX=3702 GN=UBP11 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8X7VZ09 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013709 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology