Basic Information
Locus ID:
BniB03g034380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 16652932 | 16654172 | + | BniB03g034380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 43,723.33 Da | 57.66 | 74.10 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 251 | 322 | 2.6E-13 | IPR013187 |
| Pfam | PF00646 | F-box domain | 38 | 79 | 2.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 36 | 95 | 5.89E-10 | IPR036047 |
| SMART | SM00256 | fbox_2 | 41 | 81 | 0.002 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 155 | 253 | 3.3E-19 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32660.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_033131848.1 | putative F-box protein At1g32660 [Brassica rapa] | 0 |
| Q9LPJ7 | Putative F-box protein At1g32660 OS=Arabidopsis thaliana OX=3702 GN=At1g32660 PE=4 SV=1 | 0 | |
| TrEMBL | M4DEF7 | F-box domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30790.1, AT1G32660.1 |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10002533m.g.v1.0, Thhalv10007869m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g034380.2N, BniB03g069480.2N, BniB05g000090.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008690 |