Basic Information
Locus ID:
BniB03g033280.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 15828349 | 15831522 | + | BniB03g033280.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 108,855.97 Da | 36.93 | 101.56 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 17 | 56 | 4.1E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 678 | 909 | 9.2E-41 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 133 | 191 | 1.9E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 233 | 591 | 1.57E-62 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 670 | 961 | 8.09E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 298 | 5.27E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 658 | 767 | 2.1E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 172 | 300 | 1.7E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 768 | 988 | 1.1E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 301 | 606 | 5.5E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 15 | 171 | 5.7E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 467 | 490 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 154 | 88.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 83 | 107 | 3.6 | IPR003591 |
| SMART | SM00220 | serkin_6 | 676 | 986 | 8.5E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 276 | 300 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 179 | 204 | 140.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 564 | 586 | 7.026593 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 676 | 963 | 35.537834 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 682 | 704 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 812 | 824 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 997 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 985 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_013598437.1 | PREDICTED: receptor-like protein kinase HSL1 [Brassica oleracea var. oleracea] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W1N8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013926 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology