Basic Information
Locus ID:
BniB03g032250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 15211667 | 15214410 | - | BniB03g032250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 96,486.79 Da | 32.72 | 90.96 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 554 | 823 | 7.97224E-92 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 186 | 205 | 1.7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 548 | 821 | 7.8E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 386 | 426 | 5.1E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 326 | 363 | 0.0017 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 60 | 2.7E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 434 | 3.57E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 535 | 849 | 1.71E-76 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 324 | 450 | 2.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 320 | 3.7E-75 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 519 | 624 | 1.0E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 625 | 842 | 2.6E-57 | - |
| SMART | SM00369 | LRR_typ_2 | 389 | 412 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 132 | 4.9 | IPR003591 |
| SMART | SM00220 | serkin_6 | 548 | 831 | 1.0E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 253 | 276 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 207 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 413 | 435 | 71.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 548 | 827 | 39.212677 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 554 | 575 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 672 | 684 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 886 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24650.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013726905.2 | receptor-like kinase TMK2 [Brassica napus] | 0 |
| Q9FYK0 | Receptor-like kinase TMK2 OS=Arabidopsis thaliana OX=3702 GN=TMK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W1U7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014016 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology