Basic Information
Locus ID:
BniB03g031460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 14769466 | 14769921 | - | BniB03g031460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 17,678.38 Da | 54.67 | 89.07 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 3 | 45 | 8.4E-10 | IPR001373 |
| Pfam | PF10557 | Cullin protein neddylation domain | 77 | 139 | 8.3E-21 | IPR019559 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 3 | 58 | 4.32E-8 | IPR036317 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 58 | 147 | 1.27E-23 | IPR036390 |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 2 | 58 | 1.7E-9 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 59 | 148 | 5.0E-28 | IPR036388 |
| SMART | SM00884 | Cullin_Nedd8_2 | 74 | 142 | 1.5E-27 | IPR019559 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 0 |
| RefSeq | XP_013586201.1 | PREDICTED: cullin-3A [Brassica oleracea var. oleracea] | 0 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W0Y6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014095 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g031460.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G010640 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38991, nbis-gene-41684 |