Basic Information
Locus ID:
BniB03g029590.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 13664987 | 13666822 | - | BniB03g029590.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 27,096.02 Da | 59.41 | 55.12 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 146 | 220 | 1.52158E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 218 | 3.2E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 242 | 1.29E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 233 | 5.4E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 147 | 223 | 1.8E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 232 | 12.185116 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_018459126.1 | PREDICTED: nuclear speckle RNA-binding protein B [Raphanus sativus] | 0 |
| F4HWF9 | Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W2M0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014273 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology