Basic Information
Locus ID:
BniB03g028330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12945994 | 12948412 | - | BniB03g028330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 52,090.07 Da | 34.84 | 85.99 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 355 | 416 | 1.10817E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 281 | 342 | 3.6E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 356 | 416 | 9.7E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 114 | 235 | 6.2E-32 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 52 | 260 | 1.75E-46 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 263 | 442 | 3.82E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 243 | 419 | 1.1E-49 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 109 | 242 | 5.3E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 62 | 108 | 3.8E-8 | - |
| SMART | SM00054 | efh_1 | 354 | 382 | 0.06 | IPR002048 |
| SMART | SM00054 | efh_1 | 318 | 346 | 7.5E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 65 | 235 | 3.3E-19 | IPR000719 |
| SMART | SM00054 | efh_1 | 390 | 418 | 1.7E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 282 | 310 | 4.9E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 278 | 313 | 13.816021 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 350 | 385 | 12.337564 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 314 | 349 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 386 | 421 | 13.258112 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 235 | 20.937414 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 327 | 339 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 71 | 94 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 291 | 303 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 399 | 411 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_018441022.1 | PREDICTED: calcium-dependent protein kinase 10 [Raphanus sativus] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0JZB6 | calcium-dependent protein kinase 10 OS=Raphanus sativus OX=3726 GN=LOC108813085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology