Basic Information
Locus ID:
BniB03g028070.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
calcium-binding protein CML15
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12792635 | 12793105 | + | BniB03g028070.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.23 | 17,024.94 Da | 19.60 | 93.27 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 81 | 143 | 2.29597E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 80 | 142 | 3.6E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 6 | 64 | 5.5E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 143 | 2.58E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 68 | 1.5E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 69 | 149 | 2.4E-24 | - |
| SMART | SM00054 | efh_1 | 117 | 145 | 7.5E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 7 | 35 | 0.039 | IPR002048 |
| SMART | SM00054 | efh_1 | 81 | 109 | 1.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 43 | 71 | 2.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 113 | 148 | 14.06708 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 3 | 38 | 13.509171 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 39 | 74 | 9.045907 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 77 | 112 | 15.210791 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 90 | 102 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 16 | 28 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 52 | 64 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 126 | 138 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18530.1 | EF hand calcium-binding protein family. | 0 |
| RefSeq | XP_013603934.1 | PREDICTED: probable calcium-binding protein CML15 [Brassica oleracea var. oleracea] | 0 |
| Q9FZ75 | Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397Y3S6 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T41362Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology