Basic Information
Locus ID:
BniB03g027760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12667770 | 12671425 | - | BniB03g027760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 56,154.12 Da | 53.44 | 72.85 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 253 | 0.054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 361 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 39 | 494 | 5.5E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 496 | 1.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 315 | 3.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 36 | 193 | 1.7E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 462 | 500 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 304 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 144 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 31 | 66 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 361 | 100.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 9 | 501 | 1.2E-195 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 223 | 237 | - | IPR018067 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 104 | 118 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 253 | 280 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 45 | 65 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 120 | 148 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 392 | 418 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 366 | 391 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 470 | 499 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 338 | 365 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 225 | 252 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 281 | 309 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 310 | 337 | 7.0E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 91 | 119 | 7.0E-159 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 467 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_013599580.1 | PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | M4EQD2 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology