Basic Information
Locus ID:
BniB03g027580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12590125 | 12593137 | - | BniB03g027580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 75,710.49 Da | 50.51 | 82.72 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 14 | 152 | 4.9051E-53 | - |
| Pfam | PF00582 | Universal stress protein family | 17 | 126 | 1.8E-6 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 391 | 642 | 1.7E-36 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 369 | 643 | 1.48E-62 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 128 | 6.78E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 457 | 672 | 1.7E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 355 | 456 | 9.3E-21 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 16 | 150 | 7.4E-9 | IPR014729 |
| SMART | SM00220 | serkin_6 | 386 | 647 | 2.8E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 386 | 647 | 31.877129 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 502 | 514 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 179 | - | - |
| Coils | Coil | Coil | 309 | 329 | - | - |
| Coils | Coil | Coil | 274 | 294 | - | - |
| Coils | Coil | Coil | 336 | 366 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17540.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_018465551.1 | PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 35-like [Raphanus sativus] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6J0M1J5 | LOW QUALITY PROTEIN: U-box domain-containing protein 35-like OS=Raphanus sativus OX=3726 GN=LOC108836963 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology