Basic Information
Locus ID:
BniB03g027460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Oligouridylate-binding protein 1B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12538078 | 12541056 | - | BniB03g027460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 45,668.71 Da | 48.23 | 65.38 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 1.83751E-50 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 1.42556E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 8.75595E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 2.3E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 8.2E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 321 | 1.4E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 133 | 218 | 1.29E-25 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 1.88E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 250 | 349 | 2.44E-19 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 338 | 5.5E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 4.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 217 | 1.0E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 1.9E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 8.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 8.9E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 16.346634 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.067479 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.402318 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 254 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_013599485.1 | PREDICTED: oligouridylate-binding protein 1B [Brassica oleracea var. oleracea] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TYJ4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_078884 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology