Basic Information
Locus ID:
BniB03g027040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains UspA (InterPro IPR006016), Serine threonine-protein kinase domain (InterPro IPR002290), Serine-threonine tyrosine-protein kinase (InterPro IPR001245), Serine threonine-protein kinase, active site (InterPro IPR008271), Protein kinase-like domain (InterPro IPR011009), Rossmann-like alpha beta alpha sandwich fold (InterPro IPR014729), Protein kinase, catalytic domain (InterPro IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro IPR020635)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12321693 | 12325198 | + | BniB03g027040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 82,794.88 Da | 50.98 | 75.77 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 157 | 2.52524E-56 | - |
| Pfam | PF00582 | Universal stress protein family | 18 | 146 | 6.8E-8 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 442 | 693 | 4.5E-39 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 154 | 5.78E-8 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 419 | 693 | 8.06E-67 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 16 | 154 | 2.3E-8 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 512 | 717 | 2.3E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 407 | 511 | 1.2E-24 | - |
| SMART | SM00220 | serkin_6 | 439 | 698 | 2.1E-23 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 439 | 701 | 35.354092 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 557 | 569 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 190 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
| Coils | Coil | Coil | 378 | 400 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16760.2 | - | 0 |
| RefSeq | XP_013709774.2 | U-box domain-containing protein 52-like [Brassica napus] | 0 |
| Q9FKG5 | U-box domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=PUB51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D3DWY4 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106309320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology