Basic Information
Locus ID:
BniB03g026820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12213161 | 12215680 | + | BniB03g026820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 39,123.07 Da | 54.89 | 76.69 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.79817E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.8E-14 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 144 | 181 | 3.7E-15 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 236 | 291 | 1.6E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 319 | 354 | 6.3E-12 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 233 | 300 | 1.22E-23 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 7.37E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 298 | 360 | 5.53E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 138 | 194 | 1.3E-13 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.8E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 310 | 360 | 7.0E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 136 | 186 | 1.3E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 225 | 291 | 1.6E-26 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.2E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 319 | 356 | 2.2E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 143 | 183 | 6.3E-5 | IPR015940 |
| SMART | SM00727 | CBM | 234 | 277 | 9.6E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 362 | 1.3E-121 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 141 | 184 | 13.101127 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 317 | 357 | 15.390351 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.517519 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 262 | 284 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 313 | 329 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 344 | 1.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 345 | 360 | 1.5E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 145 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16190.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013604406.1 | PREDICTED: probable ubiquitin receptor RAD23a [Brassica oleracea var. oleracea] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D3DX10 | Ubiquitin receptor RAD23 OS=Brassica oleracea var. oleracea OX=109376 GN=106311696 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology