Basic Information
Locus ID:
BniB03g026620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12122350 | 12126527 | + | BniB03g026620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 100,791.99 Da | 60.57 | 63.71 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 38 | 253 | 8.83E-8 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 565 | 611 | 1.05E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 557 | 613 | 1.3E-10 | - |
| SMART | SM00333 | TUDOR_7 | 563 | 622 | 0.0099 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 769 | 905 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 675 | - | - |
| Coils | Coil | Coil | 883 | 903 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15940.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_013604095.1 | PREDICTED: A-kinase anchor protein 12-like isoform X4 [Brassica oleracea var. oleracea] | 0 |
| Q9S9P0 | Sister chromatid cohesion protein PDS5 homolog E OS=Arabidopsis thaliana OX=3702 GN=PDS5E PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9RGP0 | CAF1C_H4-bd domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00063283 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology