Basic Information
Locus ID:
BniB03g026420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
TPL
Description:
primary shoot apical meristem specification
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 12038049 | 12043542 | - | BniB03g026420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 124,142.48 Da | 44.75 | 79.10 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 494 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 910 | 943 | 0.009 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 884 | 1090 | 7.06E-16 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 362 | 570 | 1.01E-25 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 502 | 948 | 1.57E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 519 | 723 | 1.8E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 961 | 1097 | 1.6E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 730 | 956 | 3.0E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 330 | 518 | 8.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1049 | 1089 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 627 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 538 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 61.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.4E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 541 | 584 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 494 | 8.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 995 | 1036 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 671 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 816 | 858 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 447 | 45.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 460 | 498 | 8.834696 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.088285 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 943 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 460 | 503 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 636 | 9.672996 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 481 | 495 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_013711550.2 | protein TOPLESS [Brassica napus] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B4W5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014525 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology