Basic Information
Locus ID:
BniB03g025820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 11781512 | 11785231 | + | BniB03g025820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 111,300.31 Da | 48.66 | 69.77 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 152 | 248 | 5.45728E-41 | - |
| CDD | cd13999 | STKc_MAP3K-like | 714 | 971 | 1.57465E-105 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 712 | 971 | 8.5E-61 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 165 | 247 | 1.3E-19 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 695 | 970 | 1.11E-73 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 165 | 247 | 1.9E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 796 | 988 | 2.2E-51 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 167 | 249 | 3.1E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 701 | 795 | 3.5E-24 | - |
| SMART | SM00220 | serkin_6 | 708 | 979 | 3.3E-55 | IPR000719 |
| SMART | SM00666 | PB1_new | 163 | 250 | 1.2E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 708 | 979 | 39.22681 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 714 | 735 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 833 | 845 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 942 | 964 | 6.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 790 | 803 | 6.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 827 | 845 | 6.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 898 | 920 | 6.2E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 452 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_018485595.1 | PREDICTED: probable serine/threonine-protein kinase DDB_G0267686 [Raphanus sativus] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B2F7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014567 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology