Basic Information
Locus ID:
BniB03g025200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 11387042 | 11387476 | + | BniB03g025200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 16,425.54 Da | 64.43 | 73.12 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 67 | 142 | 2.1061E-15 | - |
| Pfam | PF00789 | UBX domain | 66 | 115 | 2.0E-7 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 50 | 143 | 3.36E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 57 | 142 | 4.4E-12 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 61 | 142 | 18.894012 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 56 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23605.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_009136068.1 | plant UBX domain-containing protein 12 [Brassica rapa] | 0 |
| Q9LUG7 | Plant UBX domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUX12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W1V5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold002973G000030 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23605.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021701m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g025200.2N, BniB07g048370.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005402 |