Basic Information
Locus ID:
BniB03g025000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 11281859 | 11284234 | + | BniB03g025000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 54,786.46 Da | 52.01 | 77.39 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 24 | 64 | 2.9E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 73 | 6.63E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 111 | 1.0E-18 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 389 | 472 | 3.7E-5 | - |
| SMART | SM00184 | ring_2 | 24 | 64 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 65 | 11.913911 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 40 | 49 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 269 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23060.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018491198.1 | PREDICTED: probable E3 ubiquitin protein ligase DRIPH [Raphanus sativus] | 0 |
| Q9LS86 | Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At3g23060 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W3A4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014633 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20730.v2.2, Sp3g20740.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g025000.2N, BniB03g025060.2N, BniB03g025070.2N ... |