Basic Information
Locus ID:
BniB03g024650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 11094483 | 11097228 | - | BniB03g024650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 48,166.99 Da | 60.35 | 93.46 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 228 | 275 | 4.70587E-14 | - |
| Pfam | PF12906 | RING-variant domain | 228 | 274 | 2.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 278 | 1.72E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 282 | 3.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 227 | 275 | 8.6E-20 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 275 | 8.535474 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 220 | 281 | 20.548763 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 47 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009134888.1 | uncharacterized protein LOC103859152 isoform X1 [Brassica rapa] | 0 |
| TrEMBL | M4CAG4 | RING-CH-type domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology