Basic Information
Locus ID:
BniB03g024570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 11058026 | 11061845 | + | BniB03g024570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 114,549.65 Da | 63.87 | 58.77 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 51 | 0.00747526 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 651 | 780 | 1.37554E-60 | - |
| CDD | cd00268 | DEADc | 450 | 637 | 1.71954E-97 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 663 | 771 | 7.3E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 456 | 626 | 3.8E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.6E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 55 | 4.11E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 503 | 787 | 1.95E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 407 | 641 | 1.4E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 642 | 812 | 3.2E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 451 | 654 | 1.5E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 2.4E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 687 | 771 | 4.7E-35 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 666 | 810 | 25.277828 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 432 | 460 | 11.368543 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.4278 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 463 | 637 | 31.119181 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 583 | 591 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 982 | 997 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 1006 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 934 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_018492022.1 | PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40 [Raphanus sativus] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0P4N3 | LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40 OS=Raphanus sativus OX=3726 GN=LOC108862406 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology