Basic Information
Locus ID:
BniB03g024180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 10881397 | 10882464 | - | BniB03g024180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 38,550.08 Da | 58.33 | 59.69 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 307 | 344 | 5.5971E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 305 | 347 | 5.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 306 | 351 | 3.53E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 352 | 1.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 307 | 344 | 1.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 307 | 345 | 11.146755 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 243 | - | - |
| Coils | Coil | Coil | 272 | 299 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018491709.1 | PREDICTED: uncharacterized protein LOC108862162 [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0P4N9 | uncharacterized protein LOC108862162 OS=Raphanus sativus OX=3726 GN=LOC108862162 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology