Basic Information
Locus ID:
BniB03g024060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 10821420 | 10822959 | - | BniB03g024060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 51,319.59 Da | 42.27 | 98.83 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 80 | 122 | 2.88477E-24 | - |
| Pfam | PF04564 | U-box domain | 77 | 144 | 1.5E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 165 | 451 | 1.73E-30 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 149 | 5.3E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 199 | 459 | 1.7E-28 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 149 | 1.3E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 79 | 142 | 1.4E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 75 | 149 | 41.187344 | IPR003613 |
| Coils | Coil | Coil | 14 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07360.1 | plant U-box 9. Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_018485508.1 | PREDICTED: U-box domain-containing protein 9-like [Raphanus sativus] | 0 |
| Q9SRT0 | U-box domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0NPA5 | RING-type E3 ubiquitin transferase OS=Raphanus sativus OX=3726 GN=LOC108856242 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg36079, jg38114, jg8075, jg9833 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10362, gene_6514 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005623, Ah028389 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g077010, BVRB_7g164050, BVRB_9g211050 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17277, Sbi_jg26632, Sbi_jg33930, Sbi_jg61901 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15149, Seu_jg532 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011842, GOSA_00015445 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl73932, Sgl73937, Sgl77444, Sgl79881 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007517, gene:ENSEOMG00000012313 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0007020, CQ.Regalona.r1.4BG0007220 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30013850, pistato.v30090300 |
| Apiaceae | Apium graveolens | 3 | Ag11G03080, Ag2G01176, Ag7G00094 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G015180, scaffold000218G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698710, gene-LOC103722515, gene-LOC103722520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.1609.V1.1, AsparagusV1_09.1610.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G21083, Ftri11G11503, Ftri12G27566, Ftri9G28589 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G07360.1, AT5G18320.1, AT5G18330.1, AT5G18340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015380m.g.v1.0, Thhalv10020790m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g06300.v2.2, Sp6g25970.v2.2, Sp6g25980.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB01g056550.2N, BniB02g044480.2N, BniB03g024060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2199, Ceq08G1535 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2318, Cgl08G1565 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g01370 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0073s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g22260, gene.Thate09g00170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6410, nbisL1-mrna-9774 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2121, evm.TU.LG04.1436 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28692, Lb5G28735 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.1776, AH09.643, BH07.1763, BH09.591, CH07.1614 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0131000, gene-QOZ80_2BG0186350 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0160480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_043438, gene-QYE76_046692 |
| Poaceae | Oryza coarctata | 4 | Oco03G010350, Oco04G010480, Oco07G003200, Oco08G003500 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g28720.1, LOC_Os04g28100.1, LOC_Os09g07490.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G136100, gene-BS78_06G053000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306700, Pt_Chr0503725 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G011560, Chr13G012540, Chr15G013280, Chr23G015600 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G497100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG039890, gene_TRIDC2BG043020 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G276400.1, TraesCS2B02G294100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb241150_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20974, nbis-gene-7974 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13521, Zma_g21106 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.1088, evm.TU.LG08.754, evm.TU.LG12.646 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g03500 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.379, evm.TU.Scaffold_2_RagTag.1870 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12225, nbisL1-mrna-20689, nbisL1-mrna-20801 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12159, nbisL1-mrna-2008, nbisL1-mrna-4446 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10796, nbisL1-mrna-13839, nbisL1-mrna-21504 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000003l.957, evm.TU.utg000006l.1004 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00005437, Maker00009239, Maker00011315, Maker00013419 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-10539, nbisL1-mrna-12870, nbisL1-mrna-13941 ... |
| Rhizophoraceae | Rhizophora mangle | 5 | nbisL1-mrna-15660, nbisL1-mrna-16314, nbisL1-mrna-4571 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu16023, populus_peu19452, populus_peu30858 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609854, gene-LOC132613836 |
| Solanaceae | Solanum chilense | 3 | SOLCI000845400, SOLCI000845500, SOLCI005949900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016825, gene-LOC107017532, gene-LOC107031669 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2211_chr01_+, gene_4777 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0777, TC02G1519, TC02G3136 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01260.v3.1 |