Basic Information
Locus ID:
BniB03g023870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
COL9
Description:
Zinc finger protein CONSTANS-LIKE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 10763658 | 10764924 | - | BniB03g023870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 40,230.84 Da | 59.94 | 50.11 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd19821 | Bbox1_BBX-like | 47 | 76 | 1.0053E-9 | - |
| CDD | cd19821 | Bbox1_BBX-like | 5 | 47 | 1.37651E-13 | - |
| Pfam | PF06203 | CCT motif | 309 | 351 | 8.2E-16 | IPR010402 |
| SMART | SM00336 | bboxneu5 | 48 | 93 | 0.48 | IPR000315 |
| SMART | SM00336 | bboxneu5 | 4 | 47 | 1.1E-8 | IPR000315 |
| ProSiteProfiles | PS51017 | CCT domain profile. | 309 | 351 | 15.338455 | IPR010402 |
| ProSiteProfiles | PS50119 | Zinc finger B-box type profile. | 1 | 47 | 9.797715 | IPR000315 |
| ProSiteProfiles | PS50119 | Zinc finger B-box type profile. | 43 | 93 | 9.370983 | IPR000315 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07650.1 | CONSTANS-like 9. This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. | 0 |
| RefSeq | XP_018487304.1 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Raphanus sativus] | 0 |
| Q9SSE5 | Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W0S6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014684 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg19064, jg20518, jg21128, jg24094 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25780 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah037485, Ah037486 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg41783, Sbi_jg41789, Sbi_jg41792, Sbi_jg48337 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27665 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00021121, GOSA_00021122 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79388, Sgl81855 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018553, gene:ENSEOMG00000038943 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0005650, CQ.Regalona.r1.9BG0016130 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015610, pistato.v30016840 |
| Apiaceae | Apium graveolens | 9 | Ag11G03216, Ag11G03331, Ag2G00077, Ag3G00194, Ag4G02757 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G006590, COCNU_01G013400, COCNU_11G006050 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103714696, gene-LOC103715879, gene-LOC103716788 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.529.V1.1, AsparagusV1_05.2184.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri15G16947, Ftri3G03929, Ftri4G04291, Ftri7G07720 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G07650.1, AT5G48250.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004423m.g.v1.0, Thhalv10020967m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g18620.v2.2, Sp3g06590.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g056300.2N, BniB02g069440.2N, BniB03g023870.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2238 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2328 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07090 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g26030, gene.Thate04g26860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-2624, nbisL1-mrna-6438, nbisL1-mrna-9797 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2292 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001386, Pov_00006108, Pov_00031781, Pov_00035479 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07133, Lb7G35041 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1209, AH07.3281, BH06.1258, BH07.3100, CH06.1391 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0143890, gene-QOZ80_2BG0199290 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0610970.1, HORVU.MOREX.r3.7HG0673610.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025265 |
| Poaceae | Oryza coarctata | 4 | Oco03G020280, Oco04G020960, Oco11G007720, Oco12G007750 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g49230.2, LOC_Os06g19444.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G259200, gene-BS78_10G124300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203580, Pt_Chr0404366 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G003370, Chr09G021330, Chr10G001210, Chr11G017540 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G522900, Tel7E01G396100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG043790, gene_TRIDC6BG051370 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G286400.3, TraesCS6B02G315400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb189080_P001, Zm00001eb253150_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-21983, nbis-gene-45608, nbis-gene-52627 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14309, Zma_g17053, Zma_g29530, Zma_g31771 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1545, evm.TU.LG15.1727 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g15100, gene.Posoc02g18380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1653, evm.TU.Scaffold_9_RagTag.1453 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12149, nbisL1-mrna-20606 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11183, nbisL1-mrna-8136 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10868, nbisL1-mrna-21444 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.913, evm.TU.utg000006l.952 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009570, Maker00013612 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10483, nbisL1-mrna-13901 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15589, nbisL1-mrna-4625 |
| Salicaceae | Populus euphratica | 1 | populus_peu26860 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617534, gene-LOC132636693, gene-LOC132641013 |
| Solanaceae | Solanum chilense | 3 | SOLCI000418400, SOLCI001629500, SOLCI005231200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007493, gene-LOC107020550, gene-LOC107026393 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22926_chr05_-, STRG.29728_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1937, TC01G1938, TC03G0122 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21950.v3.1 |