Basic Information
Locus ID:
BniB03g023480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 10618561 | 10620630 | - | BniB03g023480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 50,492.06 Da | 59.85 | 77.91 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 242 | 290 | 7.96645E-17 | - |
| Pfam | PF12906 | RING-variant domain | 242 | 289 | 3.3E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 293 | 7.07E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 297 | 3.0E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 241 | 290 | 1.4E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 234 | 296 | 18.935865 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 138 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048632297.1 | probable E3 ubiquitin-protein ligase MARCHF10 [Brassica napus] | 0 |
| TrEMBL | A0A8X7VUX3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011587 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology