Basic Information
Locus ID:
BniB03g023430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 10608787 | 10610586 | + | BniB03g023430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 65,975.13 Da | 48.11 | 66.59 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 125 | 211 | 4.24037E-33 | - |
| Pfam | PF00855 | PWWP domain | 128 | 210 | 2.0E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 125 | 231 | 4.57E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 119 | 218 | 2.8E-23 | - |
| SMART | SM00293 | PWWP_4 | 125 | 186 | 9.7E-8 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 127 | 188 | 14.580272 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 538 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_018432648.1 | PREDICTED: uncharacterized protein LOC108805174 [Raphanus sativus] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VW83 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology