Basic Information
Locus ID:
BniB03g022700.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 10235801 | 10239208 | - | BniB03g022700.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 110,200.35 Da | 31.68 | 103.25 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 299 | 321 | 0.036 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 715 | 984 | 4.5E-46 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 251 | 273 | 1.5 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 202 | 223 | 0.71 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 470 | 492 | 1.6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 76 | 1.3E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 319 | 638 | 1.19E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 706 | 986 | 4.51E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 84 | 408 | 1.57E-64 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 240 | 340 | 6.2E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 143 | 239 | 1.0E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 142 | 9.0E-27 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 682 | 790 | 1.6E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 791 | 994 | 3.0E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 344 | 637 | 1.3E-84 | IPR032675 |
| SMART | SM00220 | serkin_6 | 713 | 995 | 3.1E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 249 | 273 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 345 | 369 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 127 | 151 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 468 | 492 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 564 | 588 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 516 | 540 | 87.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 713 | 995 | 36.993637 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 299 | 322 | 7.33462 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 835 | 847 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 468 | 481 | 7.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 372 | 385 | 7.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_013629429.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Brassica oleracea var. oleracea] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X7VV22 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011662 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology