Basic Information
Locus ID:
BniB03g020770.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 9180578 | 9183368 | - | BniB03g020770.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 40,855.46 Da | 34.87 | 71.80 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07607 | BAR_SH3P_plant | 43 | 252 | 8.93637E-124 | - |
| Pfam | PF14604 | Variant SH3 domain | 305 | 353 | 2.1E-7 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 300 | 355 | 7.74E-14 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 42 | 253 | 2.99E-23 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 40 | 263 | 2.5E-12 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 286 | 365 | 7.8E-13 | - |
| SMART | SM00326 | SH3_2 | 301 | 356 | 1.2E-10 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 298 | 357 | 17.440323 | IPR001452 |
| Coils | Coil | Coil | 144 | 178 | - | - |
| Coils | Coil | Coil | 188 | 208 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_018449242.1 | PREDICTED: SH3 domain-containing protein 2-like [Raphanus sativus] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B1N3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology