Basic Information
Locus ID:
BniB03g020680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
GTP binding protein beta 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 9128988 | 9130988 | - | BniB03g020680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 41,115.77 Da | 37.06 | 78.18 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 57 | 371 | 5.20303E-77 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 278 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 152 | 187 | 9.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 325 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 370 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 203 | 235 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 93 | 2.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 53 | 370 | 1.26E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 371 | 5.3E-99 | IPR015943 |
| SMART | SM00320 | WD40_4 | 194 | 235 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 187 | 8.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 371 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 136 | 0.064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 93 | 3.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 325 | 0.0041 | IPR001680 |
| PIRSF | PIRSF002394 | GNBP_B | 1 | 373 | 6.8E-135 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 379 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 339 | 379 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 154 | 191 | 9.151057 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 102 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 282 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 244 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 61 | 93 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 154 | 196 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 237 | 9.282875 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 174 | 188 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 80 | 94 | 8.9E-7 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 61 | 77 | 6.0E-21 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 99 | 114 | 6.0E-21 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 117 | 134 | 6.0E-21 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 80 | 94 | 6.0E-21 | IPR001632 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 222 | 236 | 8.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 174 | 188 | 8.9E-7 | IPR020472 |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04011 (MAPK signaling pathway - yeast)
map04011 (MAPK signaling pathway - yeast)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34460.1 | GTP binding protein beta 1. Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_018450583.1 | PREDICTED: guanine nucleotide-binding protein subunit beta-like isoform X2 [Raphanus sativus] | 0 |
| P49177 | Guanine nucleotide-binding protein subunit beta OS=Arabidopsis thaliana OX=3702 GN=GB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VWN2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1000, jg28756 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21634, gene_21638 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010250 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12453, Sbi_jg45863 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20220 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022438 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56089, Sgl61422, Sgl61657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020222, gene:ENSEOMG00000036532 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007760, CQ.Regalona.r1.9AG0016760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114200 |
| Apiaceae | Apium graveolens | 2 | Ag6G02583, Ag9G00099 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G019180, COCNU_14G009540, scaffold001875G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702709, gene-LOC103705391 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.682.V1.1, AsparagusV1_07.3155.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri3G01076, Ftri4G27553, Ftri8G00682 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025475m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32260.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g087020.2N, BniB03g020680.2N, BniB04g057040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0090 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0106 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01370, gene.Cymno14g06510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.126 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035807 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10391, Lb2G13465, Lb3G17244 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1407, BH01.1244, CH01.1288 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0222350, gene-QOZ80_3BG0267440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0333760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063185 |
| Poaceae | Oryza coarctata | 2 | Oco05G019840, Oco06G020650 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g46650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104764, Pt_Chr0105153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G008620, Chr04G025640, Chr07G024520, Chr12G028630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G042600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG045230, gene_TRIDC4BG003440 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G294000.1, TraesCS4B02G019900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052290_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20584 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3115, Zma_g788 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1842, evm.TU.LG22.22 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26430, gene.Posoc06g18490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2278, evm.TU.Scaffold_2_RagTag.224 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4983 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14094, nbisL1-mrna-18731 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3282, nbisL1-mrna-9899 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.819, evm.TU.utg000016l.94 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005869, Maker00017326 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14743, nbisL1-mrna-4652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22418 |
| Salicaceae | Populus euphratica | 2 | populus_peu08882, populus_peu36467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599163 |
| Solanaceae | Solanum chilense | 1 | SOLCI000662500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006105 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.18264_chr09_+, gene_7825 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0478, TC12G1042 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02540.v3.1 |