Basic Information
Locus ID:
BniB03g020580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 9073658 | 9075589 | - | BniB03g020580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 36,346.72 Da | 75.60 | 67.85 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 150 | 192 | 2.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 198 | 4.71E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 198 | 2.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 191 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 192 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 257 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013646716.1 | uncharacterized protein BNAC02G16220D [Brassica napus] | 0 |
| TrEMBL | A0A8X7VXI1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011843 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027120m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB03g012320.2N, BniB03g020580.2N, BniB06g048400.2N |