Basic Information
Locus ID:
BniB03g019890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 8710695 | 8713853 | - | BniB03g019890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 91,568.50 Da | 45.69 | 91.35 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 490 | 764 | 5.1E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 473 | 769 | 3.69E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 311 | 391 | 7.37E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 286 | 408 | 9.7E-24 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 564 | 792 | 1.7E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 453 | 562 | 1.5E-29 | - |
| SMART | SM00220 | serkin_6 | 487 | 766 | 6.1E-32 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 348 | 369 | 7.650349 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 487 | 769 | 37.375256 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 613 | 625 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 493 | 515 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 349 | 362 | 2.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 371 | 384 | 2.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 815 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_018448281.1 | PREDICTED: receptor-like kinase TMK2 [Raphanus sativus] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VVH3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology