Basic Information
Locus ID:
BniB03g019540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 8575225 | 8576764 | + | BniB03g019540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 17,890.38 Da | 37.06 | 66.65 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 41 | 136 | 7.3E-17 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 9 | 141 | 2.34E-37 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 144 | 9.9E-43 | IPR016135 |
| SMART | SM00212 | ubc_7 | 14 | 157 | 4.5E-16 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 11 | 158 | 37.707859 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 158 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23260.1 | MMS ZWEI homologue 1. MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage. | 0 |
| RefSeq | XP_018450617.1 | PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A [Raphanus sativus] | 0 |
| Q93YP0 | Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0KSQ4 | ubiquitin-conjugating enzyme E2 variant 1A OS=Raphanus sativus OX=3726 GN=LOC108822096 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology