Basic Information
Locus ID:
BniB03g018760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 8199659 | 8200712 | + | BniB03g018760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 17,113.01 Da | 42.34 | 74.09 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 85 | 154 | 1.45806E-31 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 84 | 153 | 3.5E-29 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 14 | 92 | 3.96E-28 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 85 | 155 | 8.57E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 85 | 159 | 1.3E-33 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 84 | 1.1E-43 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 84 | 153 | 1.7E-32 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 16 | 152 | 4.0E-41 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 156 | 1.1E-66 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 49 | 56 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26630.1 | Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein. Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. | 0 |
| RefSeq | XP_013597862.1 | PREDICTED: eukaryotic translation initiation factor 5A-2-like isoform X2 [Brassica oleracea var. oleracea] | 0 |
| Q93VP3 | Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B1U3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology