Basic Information
Locus ID:
BniB03g017620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 7754073 | 7756532 | + | BniB03g017620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 60,268.64 Da | 53.19 | 69.56 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 276 | 325 | 2.5E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 91 | 136 | 4.7E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 399 | 457 | 1.4E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 372 | 467 | 3.59E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 64 | 149 | 3.82E-15 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 256 | 336 | 1.15E-11 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13590.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_006284958.1 | uncharacterized protein LOC17879400 [Capsella rubella] | 0 |
| TrEMBL | A0A8X7S0Z0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_044411 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10018463m.g.v1.0, Thhalv10019835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g30210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g017620.2N, BniB07g025220.2N |