Basic Information
Locus ID:
BniB03g016960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 7382780 | 7385848 | - | BniB03g016960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 108,839.21 Da | 37.04 | 103.04 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 110 | 130 | 0.49 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 679 | 909 | 6.2E-42 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 207 | 228 | 0.79 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 565 | 585 | 1.7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 17 | 56 | 5.2E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 133 | 192 | 1.4E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 22 | 366 | 3.16E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 669 | 961 | 8.23E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 311 | 600 | 2.89E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 768 | 978 | 3.1E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 661 | 767 | 7.2E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 15 | 194 | 5.4E-51 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 303 | 1.1E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 304 | 609 | 6.5E-79 | IPR032675 |
| SMART | SM00220 | serkin_6 | 677 | 960 | 3.0E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 132 | 156 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 84 | 108 | 5.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 277 | 301 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 205 | 229 | 56.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 677 | 963 | 35.806381 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 683 | 705 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 812 | 824 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_013628699.1 | PREDICTED: receptor-like protein kinase HSL1 [Brassica oleracea var. oleracea] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VVF9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology