Basic Information
Locus ID:
BniB03g016310.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 7033365 | 7035185 | + | BniB03g016310.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 65,926.92 Da | 45.94 | 65.51 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 426 | 502 | 2.14606E-49 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 433 | 478 | 1.6E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 55 | 240 | 8.5E-55 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 432 | 501 | 6.28E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 421 | 508 | 2.2E-17 | IPR036638 |
| SMART | SM00353 | finulus | 435 | 484 | 3.9E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 429 | 478 | 17.110519 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 439 | - | - |
| Coils | Coil | Coil | 475 | 502 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_013586726.1 | PREDICTED: transcription factor MYC2 [Brassica oleracea var. oleracea] | 0 |
| Q39204 | Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VWP6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology