halophFGD

Basic Information

Locus ID: BniB03g015920.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B3	6829088	6830209	+	BniB03g015920.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.59	43,324.76 Da	44.97	92.73	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	17	56	1.1E-7	IPR001810
Pfam	PF07734	F-box associated	220	312	6.7E-12	IPR006527
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	103	350	2.22E-10	IPR011043
SUPERFAMILY	SSF81383	F-box domain	16	62	8.9E-7	IPR036047
Gene3D	G3DSA:2.120.10.80	-	171	307	2.0E-7	IPR015915
SMART	SM00256	fbox_2	16	56	1.7E-6	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	109	327	1.3E-23	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G11270.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_018443384.1	PREDICTED: F-box protein At1g11270-like [Raphanus sativus]	0
Swiss-Prot	Q7X7A9	F-box protein At1g11270 OS=Arabidopsis thaliana OX=3702 GN=At1g11270 PE=2 SV=1	0
TrEMBL	A0A6J0K8U7	F-box protein At1g11270-like OS=Raphanus sativus OX=3726 GN=LOC108815236 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	15	AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... AT1G12870.1, AT1G13200.1, AT1G14315.2, AT1G15015.1, AT2G02030.1, AT2G05600.1, AT2G34280.1, AT3G25550.1, AT4G01640.1, AT5G10340.1, AT5G16285.1
Brassicaceae	Eutrema salsugineum	30	Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... Thhalv10003053m.g.v1.0, Thhalv10005403m.g.v1.0, Thhalv10005596m.g.v1.0, Thhalv10005640m.g.v1.0, Thhalv10005659m.g.v1.0, Thhalv10005704m.g.v1.0, Thhalv10006448m.g.v1.0, Thhalv10006469m.g.v1.0, Thhalv10007816m.g.v1.0, Thhalv10007821m.g.v1.0, Thhalv10009459m.g.v1.0, Thhalv10009591m.g.v1.0, Thhalv10009680m.g.v1.0, Thhalv10009780m.g.v1.0, Thhalv10009873m.g.v1.0, Thhalv10010027m.g.v1.0, Thhalv10011073m.g.v1.0, Thhalv10012265m.g.v1.0, Thhalv10016004m.g.v1.0, Thhalv10017550m.g.v1.0, Thhalv10017844m.g.v1.0, Thhalv10021927m.g.v1.0, Thhalv10021998m.g.v1.0, Thhalv10022335m.g.v1.0, Thhalv10023120m.g.v1.0, Thhalv10026946m.g.v1.0, Thhalv10028258m.g.v1.0, Thhalv10028312m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... SpUn0138_0020.v2.2
Brassicaceae	Brassica nigra	27	BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... BniB02g007700.2N, BniB02g007710.2N, BniB02g007720.2N, BniB02g007750.2N, BniB02g042290.2N, BniB02g042300.2N, BniB02g044690.2N, BniB02g052300.2N, BniB03g005530.2N, BniB03g006010.2N, BniB03g015920.2N, BniB03g022450.2N, BniB04g008600.2N, BniB04g009830.2N, BniB04g009870.2N, BniB04g014510.2N, BniB04g027260.2N, BniB04g039550.2N, BniB04g054100.2N, BniB04g054110.2N, BniB05g015500.2N, BniB05g065960.2N, BniB07g019140.2N, BniB08g072430.2N
Plantaginaceae	Plantago ovata	1	Pov_00035511