Basic Information
Locus ID:
BniB03g015710.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 6733427 | 6741255 | + | BniB03g015710.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 202,524.67 Da | 49.05 | 84.52 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1469 | 1882 | 1.41799E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1516 | 1887 | 7.1E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 189 | 649 | 1.04E-41 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1461 | 1880 | 9.68E-93 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1409 | 1649 | 2.3E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 180 | 497 | 1.1E-52 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1759 | 1885 | 7.6E-32 | - |
| SMART | SM00119 | hect_3 | 1480 | 1887 | 4.2E-84 | IPR000569 |
| SMART | SM00185 | arm_5 | 347 | 385 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 304 | 344 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 221 | 262 | 44.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1493 | 1887 | 55.544811 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1278 | 1300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 977 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 140 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_018450218.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3 [Raphanus sativus] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A397YE63 | HECT-type E3 ubiquitin transferase OS=Brassica campestris OX=3711 GN=BRARA_H01854 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology