Basic Information
Locus ID:
BniB03g015470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 6643901 | 6646081 | - | BniB03g015470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 42,530.25 Da | 48.46 | 73.16 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 318 | 366 | 1.4E-9 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 275 | 369 | 1.21E-15 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 47 | 259 | 6.28E-20 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 299 | 376 | 4.9E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 46 | 274 | 8.2E-10 | IPR027267 |
| SMART | SM00326 | SH3_2 | 314 | 369 | 2.9E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 311 | 370 | 19.825275 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 280 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 149 | 172 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_013656680.2 | SH3 domain-containing protein 2 [Brassica napus] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VVQ4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012236 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology