Basic Information
Locus ID:
BniB03g015400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 6605559 | 6608279 | + | BniB03g015400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 39,494.46 Da | 59.87 | 56.20 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 259 | 307 | 8.6E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 130 | 244 | 1.7E-21 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 258 | 308 | 2.66E-16 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 324 | 3.1E-18 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 93 | 246 | 3.1E-27 | IPR043151 |
| SMART | SM00439 | BAH_4 | 128 | 245 | 2.0E-35 | IPR001025 |
| SMART | SM00249 | PHD_3 | 259 | 306 | 6.7E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 257 | 308 | 9.4633 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 128 | 245 | 23.04056 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 260 | 305 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 347 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_018447884.1 | PREDICTED: chromatin remodeling protein SHL-like isoform X1 [Raphanus sativus] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B273 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012241 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology