Basic Information
Locus ID:
BniB03g014580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 6254161 | 6265434 | + | BniB03g014580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 144,617.78 Da | 27.25 | 79.82 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 970 | 1050 | 6.73825E-29 | IPR029413 |
| CDD | cd10316 | RGL4_M | 375 | 474 | 5.29274E-34 | IPR029413 |
| CDD | cd10320 | RGL4_N | 58 | 341 | 5.34955E-74 | - |
| CDD | cd10317 | RGL4_C | 486 | 639 | 1.50236E-32 | - |
| CDD | cd10320 | RGL4_N | 697 | 937 | 5.09037E-54 | - |
| CDD | cd10317 | RGL4_C | 1062 | 1224 | 5.59719E-34 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 484 | 638 | 6.4E-37 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1060 | 1225 | 3.1E-43 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 727 | 847 | 4.2E-54 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 400 | 470 | 4.8E-23 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 976 | 1046 | 9.5E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 32 | 245 | 1.0E-104 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 991 | 1049 | 3.33E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 481 | 638 | 8.5E-29 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 60 | 368 | 2.01E-5 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1057 | 1224 | 1.79E-32 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 371 | 475 | 4.32E-9 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 1057 | 1236 | 6.5E-10 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 482 | 644 | 3.3E-8 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 969 | 1047 | 1.1E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 695 | 946 | 8.6E-10 | IPR014718 |
| Gene3D | G3DSA:2.70.98.10 | - | 51 | 349 | 4.1E-16 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 373 | 472 | 9.3E-10 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37950.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_013627090.1 | PREDICTED: probable rhamnogalacturonate lyase B [Brassica oleracea var. oleracea] | 0 |
| O65621 | Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana OX=3702 GN=CAD6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B2W4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology