Basic Information
Locus ID:
BniB03g014340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 6100641 | 6102667 | - | BniB03g014340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 63,667.42 Da | 48.77 | 85.92 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 123 | 6.0E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 209 | 436 | 4.2E-69 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 123 | 1.18E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 128 | 1.3E-10 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 209 | 460 | 73.505188 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 103 | 10.137225 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 493 | - | - |
| Coils | Coil | Coil | 497 | 517 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_018451793.1 | PREDICTED: BTB/POZ domain-containing protein NPY5 [Raphanus sativus] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VYJ7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012338 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology