Basic Information
Locus ID:
BniB03g013340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 5558577 | 5562646 | - | BniB03g013340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 78,423.12 Da | 51.20 | 81.83 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 227 | 350 | 5.43216E-54 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 2.69069E-105 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 246 | 339 | 2.3E-8 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 207 | 3.1E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 353 | 418 | 1.9E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 362 | 8.46E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 226 | 2.8E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 436 | 5.4E-52 | IPR027417 |
| SMART | SM00490 | helicmild6 | 270 | 341 | 3.3E-10 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 4.1E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 27 | 430 | 1.1E-125 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 383 | 9.991072 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 23.033585 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 481 | - | - |
| Coils | Coil | Coil | 506 | 526 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_018450391.1 | PREDICTED: ATP-dependent DNA helicase Q-like 3 [Raphanus sativus] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0KS99 | ATP-dependent DNA helicase OS=Raphanus sativus OX=3726 GN=LOC108821900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology