Basic Information
Locus ID:
BniB03g012800.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 5284188 | 5286547 | + | BniB03g012800.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 25,415.02 Da | 67.05 | 81.46 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 68 | 6.59296E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | 3.0E-24 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 175 | 1.2E-19 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 1.02E-29 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 98 | 7.4E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.6E-38 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.403275 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 181 | 13.242981 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.3E-27 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.3E-27 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.3E-27 | IPR002100 |
| Coils | Coil | Coil | 144 | 164 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51860.2 | K-box region and MADS-box transcription factor family protein . | 0 |
| RefSeq | XP_018509436.1 | MADS-box protein AGL71 isoform X1 [Brassica rapa] | 0 |
| Q9FLH5 | MADS-box protein AGL72 OS=Arabidopsis thaliana OX=3702 GN=AGL72 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B2E4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology