Basic Information
Locus ID:
BniB03g012350.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 5120773 | 5121715 | - | BniB03g012350.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 11,293.50 Da | 47.59 | 60.19 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 18 | 91 | 3.88808E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 20 | 90 | 1.6E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 5 | 95 | 4.1E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 95 | 8.5E-39 | - |
| SMART | SM00213 | ubq_7 | 20 | 91 | 2.1E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 95 | 16.167444 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_018470805.1 | PREDICTED: small ubiquitin-related modifier 1 [Raphanus sativus] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0ME87 | Small ubiquitin-related modifier OS=Raphanus sativus OX=3726 GN=LOC108842403 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology