Basic Information
Locus ID:
BniB03g012320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 5104636 | 5105352 | + | BniB03g012320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 26,881.53 Da | 47.37 | 86.01 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 164 | 209 | 2.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 215 | 2.3E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 215 | 2.0E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 209 | 10.822189 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018458142.1 | PREDICTED: RING-H2 finger protein ATL52-like [Raphanus sativus] | 0 |
| TrEMBL | A0A8X8B1L6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012513 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027120m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB03g012320.2N, BniB03g020580.2N, BniB06g048400.2N |